| 2006 | American Council of Learned Societies | $800,000 | International Peace and Security |
| 2006 | University of Cape Town | $83,144 | Higher Education and Research in Africa |
| 2006 | Academy for Educational Development, Inc. | $2,374,600 | Education |
| 2006 | Columbia University | $150,100 | International Peace and Security |
| 2006 | Family Health International | $12,792,263 | Education |
| 2006 | University of Jos | $2,500,000 | Higher Education and Research in Africa |
| 2006 | Democracy Matters Institute Inc. | $200,000 | Democracy |
| 2006 | University of Education, Winneba | $2,000,000 | Higher Education and Research in Africa |
| 2006 | Human Rights First | $100,000 | Special Projects |
| 2006 | WNET | $60,000 | Legacy |
| 2006 | Fund for War-Affected Children and Youth in Northern Uganda | $250,000 | Special Projects |
| 2006 | Communities Foundation for the National Capital Region | $100,000 | Special Projects |
| 2006 | Women's Leadership Fund | $50,000 | International Peace and Security |
| 2006 | The Epidavros Project, Inc. | $50,000 | Democracy |
| 2006 | Education Development Center, Inc. | $50,000 | Legacy |
| 2006 | President and Fellows of Harvard College | $50,000 | Education |
| 2006 | Columbia University | $16,000 | International Peace and Security |
| 2006 | Foundation for Library and Information Service Development (Pty) Ltd. | $15,000 | Special Projects |
| 2006 | Alumni Society of School of Visual Arts, Inc. | $50,000 | Legacy |
| 2006 | National Academy of Sciences | $25,000 | International Peace and Security |
| 2006 | University of KwaZulu-Natal | $40,330 | Higher Education and Research in Africa |
| 2006 | International Center for Journalists Inc. | $22,700 | Legacy |
| 2006 | Nonviolent Peaceforce | $25,000 | International Peace and Security |
| 2006 | Woodrow Wilson Presidential Library Foundation | $25,000 | Legacy |
| 2006 | University of the Witwatersrand | $15,000 | Special Projects |
